STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fptAFe(3+)-pyochelin receptor. (709 aa)    
Predicted Functional Partners:
DM82_4690
pepSY-associated TM helix family protein.
 
  
 0.954
DM82_5176
fecR family protein.
 
 
 0.940
ampG_2
sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein.
 
  
 0.891
DM82_4689
Putative membrane protein.
       0.785
dhbC
Isochor_syn: isochorismate synthase family protein.
  
  
 0.707
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.705
dhbE_2
Salicyl_syn: salicylate synthase.
  
  
 0.696
pchB
Salicylate biosynthesis protein pchB.
 
  
 0.663
fecI
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
  
 0.630
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.623
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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