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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampG_2sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein. (415 aa)    
Predicted Functional Partners:
DM82_4690
pepSY-associated TM helix family protein.
 
    0.943
fptA
Fe(3+)-pyochelin receptor.
 
  
 0.894
dhbC
Isochor_syn: isochorismate synthase family protein.
 
  
 0.879
pchB
Salicylate biosynthesis protein pchB.
 
    0.776
DM82_4184
Thiaz-red: thiazolinyl imide reductase family protein.
 
  
 0.763
DM82_4689
Putative membrane protein.
       0.730
irtB_1
ABC transporter family protein.
 
    0.700
tolC
Outer membrane efflux family protein.
  
 
  0.546
rifR
rifR.
 
  
 0.518
DM82_5031
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein.
  
     0.441
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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