STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpD_2ABC transporter family protein. (446 aa)    
Predicted Functional Partners:
cmpB_2
Binding--dependent transport system inner membrane component family protein.
 
   
 0.945
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
    
0.884
lptB_2
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
    
 
0.882
DM82_3206
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.882
cmpB_1
Binding--dependent transport system inner membrane component family protein.
 
   
 0.856
ssuC_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.847
cmpB_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.794
DM82_5695
Binding--dependent transport system inner membrane component family protein.
 
 
 0.772
cmpB_4
Binding--dependent transport system inner membrane component family protein.
 
 
 0.769
ssuC_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.756
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.