Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_4710Hypothetical protein; nfeD-like C-terminal, partner-binding family protein. (471 aa)    
Predicted Functional Partners:
qmcA_2
SPFH domain / Band 7 family protein.
 
    0.968
qmcA_3
SPFH domain / Band 7 family protein.
 
    0.782
DM82_1723
Hypothetical protein; nfeD-like C-terminal, partner-binding family protein.
  
  
 0.595
qmcA_1
SPFH domain / Band 7 family protein.
 
    0.545
DM82_4711
Helix-turn-helix domain protein.
       0.526
DM82_148
Erythromycin esterase family protein.
  
  
 0.486
DM82_5199
aminoacyl-tRNA editing domain protein.
 
     0.473
hflC
HflC protein; HflC and HflK could regulate a protease.
 
    0.462
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
    0.440
DM82_5258
Archease family protein.
 
     0.436
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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