Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rnaRibonuclease T2 family protein; Belongs to the RNase T2 family. (240 aa)    
Predicted Functional Partners:
rpmI
rpmI_bact: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
    
   0.689
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.689
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
    
   0.689
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.689
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
   0.689
rpmF
rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.689
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.689
rpsP
S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.689
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
    
   0.689
rpsI
Ribosomal S9/S16 family protein; Belongs to the universal ribosomal protein uS9 family.
    
   0.689
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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