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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntaA_1FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein. (467 aa)    
Predicted Functional Partners:
hsaA_1
sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family.
 
    0.882
DM82_4764
Putative acyl-CoA dehydrogenase domain protein.
 
    0.860
DM82_5018
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
    0.769
DM82_5185
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
    0.766
hsaA_3
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
  
    0.755
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
   
 
 0.564
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
   
 
 0.564
ssuA_4
NMT1-like family protein.
 
  
 0.496
ssuA_1
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
  
 0.480
ssuA_2
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
  
 0.471
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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