Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_4768mltA-interacting MipA family protein. (248 aa)    
Predicted Functional Partners:
DM82_4769
NAD dependent epimerase/dehydratase family protein.
 
     0.771
rstB_2
HAMP domain protein.
 
     0.761
DM82_3198
Gram-negative porin family protein.
  
     0.745
DM82_13
PAS fold family protein.
  
     0.652
rstA_2
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
     0.569
DM82_5558
Dihydroneopterin aldolase family protein.
  
     0.552
DM82_2168
Hypothetical protein.
  
     0.543
DM82_5142
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
  
     0.510
DM82_883
Hypothetical protein.
  
     0.501
DM82_5516
Calcineurin-like phosphoesterase family protein.
  
     0.488
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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