Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
qseC_3HAMP domain protein. (490 aa)    
Predicted Functional Partners:
basR_6
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 0.996
basR_2
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 0.983
rssA_2
His Kinase A domain protein.
  
  
 
0.919
DM82_4783
Bacterial extracellular solute-binding family protein.
     0.891
evgS
Response regulator.
 
 
0.839
basR_3
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.822
basR_4
Response regulator.
 
 
 0.807
basR_5
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.801
basR_1
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.786
rstA_2
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.784
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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