STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecoEcotin family protein. (173 aa)    
Predicted Functional Partners:
papC
papC N-terminal domain protein.
  
     0.568
fimA
Type-1 fimbrial protein, A chain.
  
   
 0.554
stp
Stp: serine transporter family protein.
  
     0.530
papD_1
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
  
     0.522
DM82_482
Hypothetical protein.
       0.503
DM82_131
Hypothetical protein.
  
     0.420
amiD
N-acetylmuramoyl-L-alanine amidase AmiD.
  
     0.413
chaA
Sodium/calcium exchanger family protein.
  
     0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.