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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4838Calcineurin-like phosphoesterase family protein. (253 aa)    
Predicted Functional Partners:
accA-2
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
       0.608
DM82_4314
Taurine catabolism dioxygenase TauD, TfdA family protein.
  
   
 0.607
DM82_750
Retinal pigment epithelial membrane family protein.
  
   
 0.553
agaA
Alpha-galactosidase domain protein.
 
     0.540
cfa
ubiE/COQ5 methyltransferase family protein.
  
     0.537
DM82_3695
Taurine catabolism dioxygenase TauD, TfdA family protein.
  
   
 0.481
DM82_837
Caspase domain protein.
   
 
 0.467
DM82_1577
Ankyrin repeat family protein.
   
 
 0.446
sfp_2
4'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily.
 
     0.445
mbtH
Protein mbtH.
  
     0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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