STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4840araC-like ligand binding domain protein. (164 aa)    
Predicted Functional Partners:
DM82_1624
Sigma-70, region 4 family protein.
  
    0.671
DM82_4224
Hypothetical protein.
  
     0.667
DM82_5083
Universal stress family protein.
  
     0.617
dmpI
Taut: 4-oxalocrotonate tautomerase enzyme family protein.
 
   
 0.613
DM82_2571
parB-like nuclease family protein.
  
     0.578
DM82_883
Hypothetical protein.
  
     0.544
DM82_1626
Major Facilitator Superfamily protein.
  
     0.538
fixL_2
Sensory box protein.
  
     0.538
DM82_557
Lipocalin-like domain protein.
  
     0.534
DM82_4667
Peptidase propeptide and YPEB domain protein.
  
     0.508
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.