Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
steT_2Amino acid permease family protein. (468 aa)    
Predicted Functional Partners:
DM82_4866
Peptidase S58 family protein.
       0.682
nreC_1
Bacterial regulatory s, luxR family protein.
 
     0.660
yveA_2
Amino acid permease family protein.
  
     0.656
DM82_6201
BNR repeat-like domain protein.
  
     0.505
pheP_1
Amino acid permease family protein.
  
   
 0.501
DM82_4510
Pectinacetylesterase family protein.
  
  
  0.459
DM82_4667
Peptidase propeptide and YPEB domain protein.
  
     0.441
DM82_4224
Hypothetical protein.
  
     0.433
pheP_2
Amino acid permease family protein.
  
   
 0.430
proY_2
Amino acid permease family protein.
  
   
 0.430
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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