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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mauG_2Cytochrome c family protein. (447 aa)    
Predicted Functional Partners:
plcN_4
Phosphoesterase family protein.
 
     0.733
acpA-2
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein.
 
   
 0.705
acpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein.
 
   
 0.664
oprB_1
Carbohydrate-selective porin, OprB family protein.
  
     0.478
plcN_3
PC_PLC: phospholipase C, phosphocholine-specific.
 
     0.468
DM82_1928
Lactonase, 7-bladed beta-propeller family protein.
 
 
 0.464
plcN_2
PC_PLC: phospholipase C, phosphocholine-specific.
 
     0.457
oprB_2
Carbohydrate-selective porin, OprB family protein.
  
     0.429
DM82_6294
Phosphoesterase family protein.
  
 
 0.429
DM82_1562
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
    0.411
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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