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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4889Hypothetical protein; Domain of unknown function family protein. (138 aa)    
Predicted Functional Partners:
DM82_5688
Hypothetical protein.
 
     0.575
merR1
merR regulatory family protein.
       0.524
DM82_751
Hypothetical protein.
  
     0.519
DM82_4872
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
     0.514
DM82_4746
tfoX N-terminal domain protein.
 
     0.502
DM82_5690
2OG-Fe(II) oxygenase superfamily protein.
  
     0.486
DM82_5459
YCII-related domain protein.
 
     0.435
sigK
Sigma-70 region 2 family protein; Belongs to the sigma-70 factor family.
 
     0.425
DM82_1715
Hypothetical protein.
  
     0.424
DM82_1717
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.414
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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