STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citTCitrate transporter family protein. (451 aa)    
Predicted Functional Partners:
kshA_1
Ring hydroxylating alpha subunit family protein.
 
     0.826
ophA1_1
2Fe-2S iron-sulfur cluster binding domain protein.
     
 0.703
bacD
ATP-grasp domain protein.
  
  
 0.521
maeB_1
Malic enzyme, NAD binding domain protein.
  
  
 0.521
maeB
NADP-dependent malic enzyme; Belongs to the malic enzymes family.
  
  
 0.521
fumB
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.492
DM82_4894
Helix-turn-helix family protein.
  
     0.488
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
     0.480
DM82_1181
Putative translation initiation factor IF-2.
  
     0.475
DM82_3288
LTXXQ motif family protein.
  
     0.455
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.