Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsC_4Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (341 aa)    
Predicted Functional Partners:
rbsA_3
ABC transporter family protein.
 
 
 0.975
rbsB_3
Periplasmic binding s and sugar binding domain of LacI family protein.
 
 
 0.972
araG_2
ABC transporter family protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 
 0.880
ccmA
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
 0.879
rbsA_4
ABC transporter family protein.
 
 0.879
araG_4
ABC transporter family protein.
 
 0.879
rbsA_2
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.878
araG_3
ABC transporter family protein.
 
 
 0.878
ytfQ_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 
 
 0.873
rbsB_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 
 
 0.870
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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