STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG_11Short chain dehydrogenase family protein. (247 aa)    
Predicted Functional Partners:
DM82_4914
Fumarylacetoacetate (FAA) hydrolase family protein.
 
 
  0.973
DM82_4912
Amidohydrolase family protein.
 
     0.726
garD_2
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
     0.722
DM82_5617
Short chain dehydrogenase family protein.
  
     0.720
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.697
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
 
 0.697
DM82_4909
SAF domain protein.
 
     0.554
DM82_4887
Acyltransferase family protein.
  
 
 0.549
bphB
Short chain dehydrogenase family protein.
  
     0.539
DM82_4589
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.532
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.