STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4914Fumarylacetoacetate (FAA) hydrolase family protein. (280 aa)    
Predicted Functional Partners:
fabG_11
Short chain dehydrogenase family protein.
 
 
  0.973
DM82_4912
Amidohydrolase family protein.
 
     0.746
DM82_4916
Hypothetical protein.
 
     0.670
lvr_1
Short chain dehydrogenase family protein.
 
 
   0.641
garD_2
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
     0.597
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.559
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.446
DM82_4909
SAF domain protein.
 
     0.436
hpcB_2
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein.
  
  
 0.410
hpaD
hpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
  
 0.410
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.