Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_4916Hypothetical protein. (112 aa)    
Predicted Functional Partners:
lvr_1
Short chain dehydrogenase family protein.
 
   
 0.921
DM82_4912
Amidohydrolase family protein.
 
   
 0.809
DM82_4914
Fumarylacetoacetate (FAA) hydrolase family protein.
 
     0.670
DM82_846
Alpha/beta hydrolase fold family protein.
 
     0.603
DM82_4883
Alpha/beta hydrolase fold family protein.
 
     0.585
cyt_1
Cytochrome c family protein.
  
     0.531
ybjJ
Major Facilitator Superfamily protein.
 
  
 0.512
DM82_533
Lactonase, 7-bladed beta-propeller family protein.
  
     0.512
cyt_2
Cytochrome c-551 domain protein.
  
     0.502
garD_2
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
   
 0.472
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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