STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_493Rubredoxin family protein. (60 aa)    
Predicted Functional Partners:
nirB
nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.605
thcD_2
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.605
camA
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.605
nirB-2
nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.605
andAa
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
  
 
 0.605
DM82_494
Hypothetical protein.
       0.450
DM82_3800
Fatty acid desaturase family protein.
  
  
 0.436
rbr1
Rubrerythrin family protein.
  
  
 0.430
fur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.421
DM82_2355
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
    0.409
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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