Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
epaPyscR: type III secretion apparatus protein, YscR/HrcR family. (216 aa)    
Predicted Functional Partners:
DM82_4942
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.990
ssaV_1
hrcV: type III secretion, HrcV family protein.
 
 
 0.981
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.975
yscU_1
flhB HrpN YscU SpaS family protein.
 
 
 0.973
DM82_5746
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.970
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.963
escU
escU.
 
  
 0.963
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.957
epaR-3
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.954
epaR-4
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.954
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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