STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4948hrpB1_HrpK: type III secretion protein HrpB1/HrpK. (189 aa)    
Predicted Functional Partners:
DM82_4949
hrpB2: type III secretion protein HrpB2.
       0.693
prgK_1
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
       0.562
DM82_4951
hrpB4: type III secretion protein HrpB4.
       0.449
DM82_4952
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
     
 0.448
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
       0.444
yscN_1
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
       0.435
DM82_4954
hrpB7: type III secretion protein HrpB7.
       0.435
yscU_1
flhB HrpN YscU SpaS family protein.
       0.423
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
     
 0.417
DM82_4945
hpaP: type III secretion protein HpaP.
       0.408
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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