| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ccmA-3 | rplC | DM82_495 | DM82_2915 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.770 |
| ccmA-3 | rplD | DM82_495 | DM82_2914 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.791 |
| ccmA-3 | rplT | DM82_495 | DM82_1004 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.787 |
| ccmA-3 | rplU | DM82_495 | DM82_2670 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.783 |
| ccmA-3 | rpmA | DM82_495 | DM82_2669 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.775 |
| ccmA-3 | rpmD | DM82_495 | DM82_2897 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | rpmD_bact: ribosomal protein L30. | 0.773 |
| ccmA-3 | rpsC | DM82_495 | DM82_2909 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.778 |
| ccmA-3 | rpsG | DM82_495 | DM82_2919 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.778 |
| ccmA-3 | rpsO | DM82_495 | DM82_619 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.774 |
| ccmA-3 | rpsT | DM82_495 | DM82_260 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.785 |
| rplC | ccmA-3 | DM82_2915 | DM82_495 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 0.770 |
| rplC | rplD | DM82_2915 | DM82_2914 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplT | DM82_2915 | DM82_1004 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
| rplC | rplU | DM82_2915 | DM82_2670 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
| rplC | rpmA | DM82_2915 | DM82_2669 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.993 |
| rplC | rpmD | DM82_2915 | DM82_2897 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | rpmD_bact: ribosomal protein L30. | 0.996 |
| rplC | rpsC | DM82_2915 | DM82_2909 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplC | rpsG | DM82_2915 | DM82_2919 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.996 |
| rplC | rpsO | DM82_2915 | DM82_619 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.992 |
| rplC | rpsT | DM82_2915 | DM82_260 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.946 |
