STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prgK_1III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family. (274 aa)    
Predicted Functional Partners:
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.964
DM82_4942
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.932
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.925
prgK_2
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 
0.920
ssaV_1
hrcV: type III secretion, HrcV family protein.
 
 
 0.919
yscN_1
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
 
 
 0.912
invG_1
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
 0.911
epaR-3
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.908
fliQ_3
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.907
prgK_3
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 
0.903
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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