STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscN_1III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase. (449 aa)    
Predicted Functional Partners:
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
  
 0.969
DM82_4952
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
 
 0.968
yscU_1
flhB HrpN YscU SpaS family protein.
 
 
 0.941
prgK_1
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.941
ssaV_1
hrcV: type III secretion, HrcV family protein.
 
  
 0.924
flhA_3
FHIPEP family protein.
 
 
 0.904
yscN_2
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
  
  
 
0.904
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
 
 0.903
yscN_3
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
  
  
 
0.901
yscU_3
flhB_rel_III: type III secretion, YscU/HrpY family protein.
 
 
 0.898
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.