Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4954hrpB7: type III secretion protein HrpB7. (176 aa)    
Predicted Functional Partners:
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
       0.806
yscN_1
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
       0.798
DM82_4952
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
       0.795
DM82_4951
hrpB4: type III secretion protein HrpB4.
       0.779
prgK_1
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
       0.623
DM82_4949
hrpB2: type III secretion protein HrpB2.
       0.539
DM82_4956
Helix-turn-helix domain protein.
       0.471
DM82_4948
hrpB1_HrpK: type III secretion protein HrpB1/HrpK.
       0.435
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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