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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4956Helix-turn-helix domain protein. (482 aa)    
Predicted Functional Partners:
invG_1
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
     0.832
DM82_4952
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
  
 0.812
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
 
     0.774
epaO-3
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
     0.696
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
     0.652
invG_3
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
     0.591
prgK_1
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.567
invG_4
Type II/III secretion system family protein.
  
     0.563
DM82_5756
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
  
 0.548
DM82_5544
Hypothetical protein.
  
     0.526
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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