Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_4966Surface presentation of antigens family protein. (104 aa)    
Predicted Functional Partners:
fliM
fliM_switch: flagellar motor switch protein FliM.
  
 0.986
DM82_3884
Surface presentation of antigens family protein.
  
 0.954
fliG
fliG: flagellar motor switch protein FliG.
  
 0.951
fliG_2
fliG C-terminal domain protein.
  
 0.951
escU
escU.
  
  
 0.941
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
  
  
 0.928
cheY
Chemotaxis protein CheY.
   
  0.906
cheY_2
Response regulator.
   
  0.906
fliN
fliN: flagellar motor switch protein FliN.
     
  0.900
fliN-2
fliN: flagellar motor switch protein FliN.
     
  0.900
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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