STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4978Type VI secretion lipofamily protein. (167 aa)    
Predicted Functional Partners:
motB_2
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.956
DM82_4977
Hypothetical protein.
 
  
 0.953
DM82_3763
Type VI secretion lipofamily protein.
  
  
 
0.913
hcp1_3
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.913
motB_3
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.906
DM82_4981
Hypothetical protein.
 
  
 0.903
DM82_2788
Type VI secretion lipofamily protein.
     
 
0.900
DM82_4631
Type VI secretion lipofamily protein.
     
  0.900
DM82_4633
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.898
DM82_4980
Hypothetical protein.
 
  
 0.891
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.