Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4989vgr_GE: Rhs element Vgr family protein. (784 aa)    
Predicted Functional Partners:
DM82_4984
impE family protein.
 
  
 0.912
DM82_4987
Hypothetical protein.
 
  
 0.906
DM82_4986
Hypothetical protein.
 
  
 0.904
DM82_4988
impA-related N-terminal family protein.
 
   
 0.896
DM82_4985
25-like lysozyme family protein.
 
  
 0.886
DM82_5824
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.821
DM82_5810
Hypothetical protein.
 
  
 0.816
DM82_4632
Hypothetical protein.
 
  
 0.812
DM82_4977
Hypothetical protein.
 
  
 0.812
DM82_3762
Hypothetical protein.
 
  
 0.811
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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