Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pipB2_1Pentapeptide repeats family protein. (825 aa)    
Predicted Functional Partners:
DM82_4992
Hypothetical protein.
 
     0.889
DM82_4993
Hypothetical protein.
 
  
 0.889
pipB2_2
Pentapeptide repeats family protein.
 
    
0.845
DM82_4630
Hypothetical protein.
 
  
 0.807
DM82_4628
Pentapeptide repeats family protein.
 
   
 0.795
DM82_5821
Hypothetical protein.
 
  
 0.786
DM82_4989
vgr_GE: Rhs element Vgr family protein.
 
    0.766
DM82_4986
Hypothetical protein.
 
    0.640
DM82_4987
Hypothetical protein.
 
    0.630
DM82_4984
impE family protein.
  
    0.571
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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