Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4995Alpha-2-macroglobulin family protein. (2029 aa)    
Predicted Functional Partners:
pbpC
PBP_1c: penicillin-binding protein 1C.
 
   
 0.957
DM82_3502
Hypothetical protein.
  
  
 0.555
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.507
DM82_2777
Hypothetical protein.
  
    0.482
nuc
Endonuclease.
   
    0.473
pld_2
PLD-like domain protein.
   
    0.473
DM82_3759
Hypothetical protein.
   
    0.463
DM82_6126
tonB dependent receptor family protein.
  
     0.409
DM82_1625
Gram-negative porin family protein.
  
     0.407
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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