Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4997Collagenase family protein. (649 aa)    
Predicted Functional Partners:
gbpA
Chitin binding domain protein.
  
   
 0.648
epaO-4
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
     0.622
DM82_4666
Peptidase M20/M25/M40 family protein.
  
     0.614
lasA
Peptidase M23 family protein.
  
    0.614
thcD_3
FAD binding domain protein.
  
     0.561
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
     0.542
dhaT
Iron-containing alcohol dehydrogenase family protein.
   
    0.512
DM82_5374
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
  
    0.511
DM82_4029
Thioredoxin family protein.
  
     0.505
fliE-2
Flagellar hook-basal body complex FliE family protein.
  
     0.468
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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