STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5014Putative methyltransferase. (286 aa)    
Predicted Functional Partners:
DM82_5013
Short chain dehydrogenase family protein.
 
     0.904
melO
Tyrosinase.
  
     0.696
DM82_4147
Putative dioxygenase.
  
     0.604
DM82_5151
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
     0.536
hadL
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
     0.531
xlnD
Squalene epoxidase family protein.
  
     0.508
dehII-2
HAD_type_II: haloacid dehalogenase, type II.
  
     0.500
nahG
FAD binding domain protein.
  
     0.485
oxdD
Oxalate decarboxylase oxdD.
  
     0.482
DM82_1689
Capsular polysaccharide synthesis family protein.
  
     0.479
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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