STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amaB_1Hydantase: amidase, hydantoinase/carbamoylase family protein. (408 aa)    
Predicted Functional Partners:
amaB_2
Hydantase: amidase, hydantoinase/carbamoylase family protein.
  
  
 
0.925
amaB_3
Hydantase: amidase, hydantoinase/carbamoylase family protein.
  
  
 
0.905
DM82_1437
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
 0.800
puuC_1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
 0.800
gabD_1
Aldehyde dehydrogenase family protein.
     
 0.800
uraD
UHCUDC: OHCU decarboxylase.
   
 0.712
proP_6
Sugar (and other) transporter family protein.
       0.669
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.491
glmS-2
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.491
argA
N-Ac-Glu-synth: amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.431
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.