STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdiA_2Sigma-70, region 4 family protein. (239 aa)    
Predicted Functional Partners:
lasI_1
Autoinducer synthetase family protein.
 
 
 0.987
evgS
Response regulator.
   
 
 0.850
lasI_2
Autoinducer synthetase family protein.
 
  
 0.778
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.639
DM82_5059
Hypothetical protein.
       0.578
degS_2
Response regulator.
 
 
 0.578
degS_1
Histidine kinase family protein.
 
 
 0.562
narX_2
Histidine kinase family protein.
 
 
 0.543
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
 
 0.430
arcB_4
Sensory box protein.
   
 
 0.409
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.