Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
fabG3_1Short chain dehydrogenase family protein. (256 aa)    
Predicted Functional Partners:
kshA_2
Rieske [2Fe-2S] domain protein.
 
     0.894
DM82_5071
Cupin family protein.
 
     0.858
hsaD_2
Alpha/beta hydrolase fold family protein.
 
 
  0.814
ilvB_1
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
 
  0.800
DM82_5078
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
    0.778
fabG_12
Short chain dehydrogenase family protein.
 
    
0.767
fabG_18
Short chain dehydrogenase family protein.
  
     0.748
andAb_1
Rieske [2Fe-2S] domain protein.
 
    0.748
bphB
Short chain dehydrogenase family protein.
  
     0.747
nadX
Hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
     0.735
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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