Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsaD_2Alpha/beta hydrolase fold family protein. (298 aa)    
Predicted Functional Partners:
DM82_5071
Cupin family protein.
 
     0.950
fabG_12
Short chain dehydrogenase family protein.
 
 
  0.945
ilvB_1
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
  
  0.935
nadX
Hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
     0.928
pobR_1
Bacterial transcriptional regulator family protein.
 
     0.897
kshA_2
Rieske [2Fe-2S] domain protein.
 
 
   0.890
DM82_5078
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
  
 0.889
fabG3_1
Short chain dehydrogenase family protein.
 
 
  0.814
DM82_4589
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.778
aldA
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
 
     0.716
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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