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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldAAldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family. (496 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
  
 
0.910
alkJ_1
FAD dependent oxidoreductase family protein.
  
 
 0.904
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
 
 0.904
alkJ_5
GMC oxidoreductase family protein.
  
 
 0.904
alkJ_6
GMC oxidoreductase family protein.
  
 
 0.904
bnzA
Ring hydroxylating alpha subunit family protein.
   
 
  0.900
DM82_5078
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
   
 0.790
DM82_5071
Cupin family protein.
   
 0.752
fabG_12
Short chain dehydrogenase family protein.
 
   0.749
ilvB_1
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
 
 0.747
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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