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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompA_2smpA / OmlA family protein. (276 aa)    
Predicted Functional Partners:
yadA_3
Coiled stalk of trimeric autotransporter adhesin family protein.
 
   
 0.729
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.696
skp
Outer membrane family protein; Belongs to the skp family.
 
 
 0.602
DM82_4536
Alginate export family protein.
   
 0.600
DM82_5127
Autotrans_barl: outer membrane autotransporter barrel domain protein.
 
  
 0.580
DM82_11
Putative lipoprotein.
  
 
 0.555
btuB
tonB dependent receptor family protein.
     
 0.511
hxuB
POTRA domain, ShlB-type family protein.
     
 0.499
DM82_2449
Polysaccharide biosynthesis/export family protein.
  
 0.484
DM82_3721
Lipid A 3-O-deacylase family protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
   
 0.461
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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