Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nlpD_5lysM domain protein. (327 aa)    
Predicted Functional Partners:
amiC_2
N-acetylmuramoyl-L-alanine amidase family protein.
 
 
 0.802
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.617
DM82_3657
Hypothetical protein; Prc: C-terminal processing peptidase family protein; Belongs to the peptidase S41A family.
 
  
 0.612
DM82_5804
Hypothetical protein.
  
  
 0.577
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
  
 0.557
mrcA_5
PBP_1a_fam: penicillin-binding, 1A family protein.
 
   
 0.557
mrcA
mrcA, penicillin-binding 1 (Peptidoglycan synthetase) transmembrane protein.
 
   
 0.557
mrcA_2
PBP_1a_fam: penicillin-binding, 1A family protein.
 
   
 0.544
pheT
pheT_bact: phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.543
yggG_3
Peptidase M48 family protein.
 
 
   0.539
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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