Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gsiA_6ABC transporter family protein. (293 aa)    
Predicted Functional Partners:
ddpC_1
Binding--dependent transport system inner membrane component family protein.
 
 0.995
dppB_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.978
dppC
Binding--dependent transport system inner membrane component family protein.
 
 0.971
oppC_1
Binding--dependent transport system inner membrane component family protein.
 
 0.971
gsiD
Glutathione transport system permease protein gsiD.
 
 0.941
oppC_2
Binding--dependent transport system inner membrane component family protein.
 
 0.932
ddpC_2
Binding--dependent transport system inner membrane component family protein.
 
 0.930
gsiA_5
ABC transporter family protein.
 
  
0.928
gsiB_1
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 
 0.918
oppB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.899
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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