Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddpXD-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (187 aa)    
Predicted Functional Partners:
DM82_5126
Helix-turn-helix domain, rpiR family protein.
 
     0.820
gsiB_1
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
    0.647
dppB_3
Binding--dependent transport system inner membrane component family protein.
       0.507
gsiA_6
ABC transporter family protein.
  
    0.467
DM82_926
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein; Belongs to the glycosyl hydrolase 3 family.
 
      0.440
ddpC_1
Binding--dependent transport system inner membrane component family protein.
       0.438
gsiA_5
ABC transporter family protein.
       0.424
ddlB
D-alanine--D-alanine ligase family protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.423
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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