Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5127Autotrans_barl: outer membrane autotransporter barrel domain protein. (1133 aa)    
Predicted Functional Partners:
DM82_5163
Hypothetical protein.
   
    0.821
DM82_5164
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.813
fhuA_1
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.741
bfrD
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.733
fhuA_3
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.732
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.713
DM82_5989
tonB-copper: TonB-dependent copper receptor.
  
 
 
 0.713
hxuB
POTRA domain, ShlB-type family protein.
 
  
 0.703
DM82_1816
Sulfotransferase family protein.
  
  
 0.625
DM82_2217
YXWGXW repeat family protein.
  
  
 0.625
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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