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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5127Autotrans_barl: outer membrane autotransporter barrel domain protein. (1133 aa)    
Predicted Functional Partners:
DM82_5163
Hypothetical protein.
   
    0.836
DM82_5164
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.832
fhuA_1
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.720
bfrD
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.712
fhuA_3
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.711
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.690
DM82_5989
tonB-copper: TonB-dependent copper receptor.
  
 
 
 0.690
hxuB
POTRA domain, ShlB-type family protein.
 
  
 0.671
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.598
ompA_2
smpA / OmlA family protein.
 
  
 0.580
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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