STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxdDOxalate decarboxylase oxdD. (418 aa)    
Predicted Functional Partners:
fmdA
Formamidase.
 
  
  0.917
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
  
  0.915
purU-2
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
  
  0.915
hutG
hutG_amidohyd: N-formylglutamate deformylase.
     
  0.900
nuoE-2
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
     
  0.900
nqo1_1
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein.
     
  0.900
DM82_2155
Fdh-alpha: formate dehydrogenase, alpha subunit.
     
  0.900
DM82_2156
NADH-dependent formate dehydrogenase delta subunit FdsD family protein.
     
  0.900
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
     
  0.900
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
     
  0.900
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.