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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5135Putative DNA-binding domain protein. (122 aa)    
Predicted Functional Partners:
mntB
ABC 3 transport family protein.
  
 
 0.935
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
    
  0.890
lepB-2
sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.
   
    0.864
pstS
Phosphate ABC transporter, phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
 0.842
cysA
Sulfate ABC transporter, ATP-binding family protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
    
 0.728
potA_6
ABC transporter family protein.
    
 0.728
lptG
Putative permease YjgP/YjgQ family protein.
    
  0.717
lptF
Putative permease YjgP/YjgQ family protein.
    
  0.717
DM82_3801
ABC transporter, phosphonate, periplasmic substrate-binding family protein.
  
 
  0.709
phnD
3A0109s03R: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding family protein.
  
 
  0.709
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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