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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltIGlutamate/aspartate periplasmic-binding protein. (86 aa)    
Predicted Functional Partners:
artM_3
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
  
 0.860
DM82_5141
Hypothetical protein.
       0.773
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
    
 0.701
fimA_3
Fimbrial family protein.
  
     0.689
fimA
Type-1 fimbrial protein, A chain.
  
     0.640
flhD_1
Flagellar transcriptional activator family protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways.
  
     0.632
papD_1
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
  
     0.572
papC
papC N-terminal domain protein.
  
   
 0.557
ytfF
eamA-like transporter family protein.
  
  
  0.539
polB
DNA polymerase family B, exonuclease domain protein.
  
     0.521
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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