Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
cnrHsigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein. (175 aa)    
Predicted Functional Partners:
DM82_2055
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
  
 
 0.817
DM82_5161
Hypothetical protein.
     
 0.789
sigC
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
   
 0.588
DM82_5164
Hypothetical protein; Belongs to the UPF0276 family.
 
    0.587
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.584
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.580
DM82_5163
Hypothetical protein.
  
    0.568
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.560
sigM
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
   
 0.555
DM82_5165
Hypothetical protein.
  
    0.536
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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