STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5176fecR family protein. (334 aa)    
Predicted Functional Partners:
fecI
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.976
fptA
Fe(3+)-pyochelin receptor.
 
 
 0.935
fhuA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
 
 0.885
fhuA_3
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.881
DM82_1258
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.847
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.778
bfrD
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.745
fhuA_1
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.730
DM82_4249
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
 
  
 0.599
DM82_5989
tonB-copper: TonB-dependent copper receptor.
 
  
 0.561
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.