Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
actP_3Putative membrane protein. (516 aa)    
Predicted Functional Partners:
DM82_517
Hypothetical protein.
 
   
 0.973
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.970
artM_3
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
  
 0.592
plcN_4
Phosphoesterase family protein.
  
     0.574
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
  
 0.530
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.505
evgS
Response regulator.
   
 
 0.502
DM82_516
Methyltransferase domain protein.
     
 0.465
shc
Hopene_cyclase: squalene-hopene cyclase.
  
   
 0.453
arcB_4
Sensory box protein.
  
  
 0.451
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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